Package: DiscreteGapStatistic 1.1.2
DiscreteGapStatistic: An Extension of the Gap Statistic for Ordinal/Categorical Data
The gap statistic approach is extended to estimate the number of clusters for categorical response format data. This approach and accompanying software is designed to be used with the output of any clustering algorithm and with distances specifically designed for categorical (i.e. multiple choice) or ordinal survey response data.
Authors:
DiscreteGapStatistic_1.1.2.tar.gz
DiscreteGapStatistic_1.1.2.zip(r-4.7)DiscreteGapStatistic_1.1.2.zip(r-4.6)DiscreteGapStatistic_1.1.2.zip(r-4.5)
DiscreteGapStatistic_1.1.2.tgz(r-4.6-x86_64)DiscreteGapStatistic_1.1.2.tgz(r-4.6-arm64)DiscreteGapStatistic_1.1.2.tgz(r-4.5-x86_64)DiscreteGapStatistic_1.1.2.tgz(r-4.5-arm64)
DiscreteGapStatistic_1.1.2.tar.gz(r-4.7-arm64)DiscreteGapStatistic_1.1.2.tar.gz(r-4.7-x86_64)DiscreteGapStatistic_1.1.2.tar.gz(r-4.6-arm64)DiscreteGapStatistic_1.1.2.tar.gz(r-4.6-x86_64)
DiscreteGapStatistic_1.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
DiscreteGapStatistic/json (API)
| # Install 'DiscreteGapStatistic' in R: |
| install.packages('DiscreteGapStatistic', repos = c('https://ecortesgomez.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ecortesgomez/discretegapstatistic/issues
- concussion - Concussion Data
- mass - Mass data
Last updated from:0c05e302e0. Checks:4 WARNING, 2 OK, 7 FAIL. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | WARNING | 240 | ||
| linux-devel-x86_64 | WARNING | 218 | ||
| source / vignettes | OK | 259 | ||
| linux-release-arm64 | WARNING | 166 | ||
| linux-release-x86_64 | WARNING | 184 | ||
| macos-release-arm64 | FAIL | 100 | ||
| macos-release-x86_64 | FAIL | 160 | ||
| macos-oldrel-arm64 | FAIL | 139 | ||
| macos-oldrel-x86_64 | FAIL | 243 | ||
| windows-devel | FAIL | 72 | ||
| windows-release | FAIL | 70 | ||
| windows-oldrel | FAIL | 70 | ||
| wasm-release | OK | 176 |
Exports:BhattacharyyaDist_rcppChisqDist_rcppclusGapDiscrclusterFunSelDGSrundistanceHeatdistancematrixfindKkmodesDlikert.heat.plot2plotMDS2ResHeatmapRetrClustAssignSimData
Dependencies:abindade4apebackportsbase64encBiobaseBiocGenericsbioDistbslibcachemcheckmatecirclizecliclueclustercodetoolscolorspacecombinatComplexHeatmapcpp11crayoncultevodata.tabledigestdoParalleldplyrevaluatefarverfastmapFDfontawesomeforeachforeignFormulafsgenericsgeometryGetoptLongggplot2ggrepelGlobalOptionsgluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsIRangesisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglatticelifecyclelinproglpSolvemagicmagrittrMASSMatrixmatrixStatsmemoisemgcvmimenlmennetpermutepheatmappillarpixmappkgconfigplyrpngPolychromepspearmanpurrrR6rappdirsRColorBrewerRcppRcppArmadilloRcppProgressreshape2rjsonrlangrmarkdownrpartrstudioapiS4VectorsS7sassscalesscatterplot3dshapespstringistringrtibbletidyrtidyselecttinytexutf8vctrsveganviridisLitewithrxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Bhattacharyya Distance via Rcpp | BhattacharyyaDist_rcpp |
| Chi-square Distance via Rcpp | ChisqDist_rcpp |
| Discrete application of clusGap | clusGapDiscr |
| Discrete application of clusGap - core function. | clusGapDiscr0 |
| Clustering generating function | clusterFunSel |
| Concussion Data | concussion |
| Run the Discrete Gap Statistic workflow and save plots | DGSrun |
| Sample-to-sample heatmap | distanceHeat |
| Calculate categorical distance matrix for discrete data | distancematrix |
| Criteria to determine number of clusters k | findK |
| Adapted k-modes algorithm | kmodesD |
| Summary Heatmap for categorical data | likert.heat.plot2 |
| mass data | mass |
| MDS Plots for Categorical Data | plotMDS2 |
| Discrete Data Heatmap | ResHeatmap |
| Retrieve cluster assignments from a DiscreteGapStatistic heatmap run | RetrClustAssign |
| Simulate Data | SimData |
